Good, that means the system is mature and not new. That's one issue I can put behind us. Anything sharp in the tank, such as jagged rocks? If so, I recommend removing them. Koi have a hard enough time dealing with the glass walls, I do recommend trying to place plants of even wrapping the sides of the tank. The only glass that should be seen through is the front. Koi aren't real smart about fish tanks, Even after they have been in the tanks for some time if a light gets turned on or something spooks them they try and flee fast and run into all kinds of things, I've actually seen them smash into the side wall with so much speed that they broke the jaws or even killed themselves
You said that some of the scales are sticking out, does the fish appear to be swollen on both side or just one? as for the salt, I would add 3/4 of a cup of aquarium or rock salt if the only fish you have in the tank are koi. If you have other kinds of fish in the tank let me know before doing that, lets make sure that those fish can handle that much salt or not. If you have a Pleco he can handle it, anything else I need to know about. have you checked to see if there is a Vet. in your area that can do a skin scrape and check it for you. If not have you checked to see if there is a Koi club in your area. serious koi keepers usually do their own skin scrapes or at least know who in the area that does.
One last thing, Try locating someplace that sells medicated food. medicated food gets the medicine inside the fish and is far more successful for treating than bottled meds in most cases. BUT again, we need to find out what your treating before treating them. Just try and locate it for now so you will know where to go once a diagnoses is made. I'm thinking bacterial infection or fungal infection from a injury but I could be way off base. It's so hard to try and treat fish from afar.