I am just a do it myself, redo it if it isn't working person
But after reading your and the other comments........I would pull back the liner and decorative rocks and make a raised berm and fully cover it with liner, then back with the rocks you already have. Then in the area I pulled the dirt to make the berm, make a french drain of a small ditch of rocks to direct the water where you want it. If there is enough liner, I would have it go down into the pond side of the French drain.
My hesitation with liner is that it does not let air through so plants would have a hard time growing. If you want plants in the dirt, landscape fabric might be a better material for part of this since it would allow you to plant in the area.
If you are not wanting plants, the pond liner would help prevent weeds and direct the water more thoroughly.
Depending on the amount of water you are trying to divert, some French drains have an actual PVC pipe with holes to catch and direct the water farther away.